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Publications nCounter Core Facility Customers


Since 2012 18 original articles were published of which 12 were from groups of the Heidelberg campus (**); among those 8 were from CellNetworks members.


1.      **Hammer C, Cichon S, Mühleisen TW, Haenisch B, Degenhardt F, Breuer R, Witt S, Strohmaier J, Oruc L, Rivas F, Babadjanova G, Grigoroiu-Serbanescu M, Hauser J, Röth R, Rappold G, Rietschel M, Nöthen MN, Niesler B (2012). Replication of functional serotonin receptor type 3A and B variants in bipolar affective disorder: a European multicenter study, Transl Psychiatry 2: e103; doi:10.1038/tp.2012.30
2.      Trilling M, Bellora N, Rutkowski AJ, de Graaf M, Dickinson P, Robertson K, Prazeres da Costa O, Ghazal P, Friedel CC, Albà MM, Dölken L (2013). Deciphering the modulation of gene expression by type I and II interferons combining 4sU-tagging, translational arrest and in silico promoter analysis. Nucleic Acids Res. 2013 Sep;41(17):8107-25. doi: 10.1093/nar/gkt589. Epub 2013 Jul 5.
3.      Stoilova B, Kowenz-Leutz E, Scheller M, Leutz A. Lymphoid to myeloid cell trans-differentiation is determined by C/EBPβ structure and post-translational modifications. PLoS One. 2013 Jun 5;8(6):e65169. doi: 10.1371/journal.pone.0065169. Print 2013. PMID: 23755188
4.      **Genome-wide identification and functional analyses of microRNA signatures associated with cancer pain. Bali KK, Selvaraj D, Satagopam VP, Lu J, Schneider R, Kuner R. EMBO Mol Med. 2013 Nov;5(11):1740-58. doi: 10.1002/emmm.201302797. Epub 2013 Oct 18. PMID: 24039159
5.      **Körber C, Dondzillo A, Eisenhardt G, Herrmannsdörfer F, Wafzig O, Kuner T (2014). Gene expression profile during functional maturation of a central mammalian synapse. Eur J Neurosci. 2014 Sep;40(6):2867-77. doi: 10.1111/ejn.12661. Epub 2014 Jul 3. PMID: 24995587
6.      **Walstab J, Wohlfarth C, Hovius R, Schmitteckert S, Röth R, Lasitschka F, Wink M, Bönisch H, Niesler B. Natural compounds boldine and menthol are antagonists of human 5-HT3 receptors: implications for treating gastrointestinal disorders. Neurogastroenterology and Motility. 2014 Jun;26(6):810-820. doi: 10.1111/nmo.12334. Epub 2014 Apr 8. (IF 3,424)
7.      **Schlupf J, Steinbeißer H (2014) IGF antagonizes the Wnt/β-Catenin pathway and promotes differentiation of extra-embryonic endoderm. Differentiation. 2014 Jun;87(5):209-19. doi: 10.1016/j.diff.2014.07.003. Epub 2014 Oct 5
8.      Rosenbaum C, Schick MA, Wollborn J, Heider A, Scholz CJ, Cecil A, Niesler B, Hirrlinger J, Walles H, Metzger M. (2016) Activation of enteric glia during acute systemic inflammation in vitro and in vivo. PLoS One. 2016 Mar 10;11(3):e0151335. doi: 10.1371/journal.pone.0151335. eCollection 2016.
9.      **Linge A, Löck S, Gudziol V, Nowak A, Lohaus F, von Neubeck C, Jütz M, Abdollahi A, Debus J, Tinhofer I, Budach V, Sak A, Stuschke M, Balermpas P, Rödel C, Avlar M, Grosu AL, Bayer C, Belka C, Pigorsch S, Combs SE, Welz S, Zips D, Buchholz F, Aust DE, Baretton GB, Thames HD, Dubrovska A, Alsner J, Overgaard J, Baumann M, Krause M; DKTK-ROG. Low Cancer Stem Cell Marker Expression and Low Hypoxia Identify Good Prognosis Subgroups in HPV(-) HNSCC after Postoperative Radiochemotherapy: A Multicenter Study of the DKTK-ROG. Clin Cancer Res. 2016 Jun 1;22(11):2639-49. doi: 10.1158/1078-0432.CCR-15-1990. Epub 2016 Jan 11.
10.   **Pruunsild P, Bengtson CP, Bading H (2017). Networks of Cultured iPSC-Derived Neurons Reveal the Human Synaptic Activity-Regulated Adaptive Gene Program. Jan 3;18(1):122-135. doi: 10.1016/j.celrep.2016.12.018. Cell Rep.
11.   **Martínez C, Rodiño-Janeiro BK, Lobo B, Stanifer ML, Klaus B, Granzow M, González-Castro AM, Salvo-Romero E, Alonso-Cotoner C, Pigrau M, Frias C, Roeth R, Rappold G, Huber W, Gonzalez- Silos R, Lorenzo J, de Torres I, Azpiroz F, Boulant S, Vicario M*, Niesler B*& Santos J*(2017) miR-16 and miR-125b are involved in barrier function dysregulation through the modulation of claudin-2 and cingulin expression in the jejunum in irritable bowel syndrome with diarrhoea, Gut, 2017 Jan 12. pii: gutjnl-2016-311477. doi: 10.1136/gutjnl-2016-311477. [Epub ahead of print],*joined senior authorship
12.   **Hoffmann S*, Schmitteckert S*, Glaser A1, Preiss H, Sumer S, Rolletschek A, Granzow M, Eckstein V, Niesler B and Rappold GA (2017). Comparative expression analysis of Shox2-deficient embryonic stem cell-derived sinoatrial node-like cells, Stem Cell Res. 2017 May;21:51-57. doi: 10.1016/j.scr.2017.03.018. Epub 2017 Mar 29.
13.   Worst TS, Daskalova K, Steidler A, Berner-Leischner K, Röth R, Niesler B, Weis CA, Kriegmair MC, Erben P, Pfalzgraf D (2017). Novel insights into a reputably irreversible process: combined mRNA and miRNA profiling of tissue from vesicourethral anastomotic stenosis after radical prostatectomy. World J Urol. 2017 Jun 20. doi: 10.1007/s00345-017-2060-2. [Epub ahead of print]
14.   **Schmitteckert S, Griesbeck A, Sumer S, Jauch A, Rolletschek A, Niesler B, Rappold GA, Hoffmann S (2017) Murine transgenic embryonic stem cell lines for the investigation of sinoatrial node-related molecular pathways, Lab Resource, in press
15.   Worst TS, Daskalova K, Steidler A, Berner-Leischner K, Niesler B, Röth R, Erben P, Pfalzgraf D. Impact of altered Wnt stimulation on bladder wall fibroblasts – implications for urinary tract wound healing and regeneration (2017). Urologia Internationalis, Urol Int. 2017;99(4):476-483. doi: 10.1159/000481440. Epub 2017 Oct 31. 
16.   **Wohlfarth C#, Schmitteckert S#,  Härtle JD, Houghton LA, Dweep H, Fortea M, Assadi G, Braun A, Mederer T, Pöhner S, Becker PB, Fischer C, Granzow M, Mönnikes H, Mayer EA, Sayuk G, Boeckxstaens G, Wouters MM,  Simrén M,  Lindberg G, Ohlsson B, Schmidt PT, Dlugosz A , Agreus L,   Andreasson A,  D’Amato M, Burwinkel B, Lorenzo J, Röth R, Lasitschka F, Vicario M, Metzger M,, Santos J, Rappold G, *Martinez C¸ *Niesler B, (2017) miRNA-16 and miR-103 impact 5-HT4 receptor signalling and correlate with symptom profile in irritable bowel syndrome , SciRep, 2017 Oct 31;7(1):14680. doi: 10.1038/s41598-017-13982-0., #joined first authorship, *joined senior authorship
17.   **Braun A*, Martínez-Martínez C*, Schmitteckert S., Röth R., Lasitschka F*, Niesler B*. (2017). Investigation of site-specific gene expression in the human intestine by a combined approach using laser-capture microdissection and nCounter analysis, *equal contribution, Neurogastroenterology and Motility, 2017 Nov 28. doi: 10.1111/nmo.13261. [Epub ahead of print]
18.   Steven S, Dib M, Hausding M, Kashani F, Oelze M, Kröller-Schön S, Hanf A, Daub S, Roohani S, Gramlich Y, Lutgens E, Schulz E, Becker C, Lackner KJ, Kleinert H, Knosalla C, Niesler B, Wild PS, Münzel T, Daiber A. (2018) CD40L controls obesity-associated vascular inflammation, oxidative stress, and endothelial dysfunction in high fat diet-treated and db/db mice. Cardiovasc Res. 2018 Feb 1;114(2):312-323. doi: 10.1093/cvr/cvx197.
19.   Liang J, Jahraus B, Balta E, Ziegler JD, Hübner K, Blank N, Niesler B, Wabnitz GH, and Samstag Y. Sulforaphane Inhibits Inflammatory Responses of Primary Human T-cells by increasing ROS and depleting Glutathione, Journal of Autoimmunity, under review
20.   Thoeni C, Waldherr R, Scheuerer J, Schmitteckert S, Roeth R, Niesler B, Flechtenmacher C, Goeppert B, Schirmacher P, Lasitschka F, Altered Expression of ATP-binding cassette (ABC) transporters ABCB11 (BSEP) and ABCB4 (MDR3) in hepatocytes of patients with primary sclerosing cholangitis (PSC), submitted
 
To view the full list of publications using data generated with the nCounter platform, please access: www.nanostring.com/community/publications

 

Last update 19.07.2018