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Postdoctoral Researcher (f/m/x) in Bioinformatics / Department II of Internal Medicine (Nephrolab Cologne) | CECAD Research Center

as soon as possible

full-time; limited for 3 years according to WissZeitVG (Third-party funded project)

Your salary will be based on TV-L

» Your tasks

In this Postdoctoral project, the successful bioinformatics applicant will develop more sophisticated methods for spatial reconstruction of single cell RNAseq data in conjunction with image-based guides of the same tissue and enhance and improve our bioinformatic workflow (CALINCA) to analyze the distribution and gradients of lncRNAs as well as other non-coding features across the tissue as part of the DFG-funded clinical research unit 329 on Disease Pathways in podocyte injury.

» Your Profile

We are seeking a highly motivated Postdoc candidate who has a strong background in bioinformatics with a special interest in disease-oriented research employing multilayer omics-data.

» Our Offer

We offer a position in a third-party funded project with a duration of 3 years. As indicated above, the primary contract with the University Hospital Cologne would last 1.5 years. However, we will - from the beginning - aim to offer additional 1.5 years within the collaboration with the Dieterich Lab (University Heidelberg). The position itself will be primarily based in Cologne and – beside online conferences – be accompanied by regular visits to the Dieterich Lab in Heidelberg.

The successful candidate would work in an interdisciplinary team of basic researchers, computational biologist and clinician scientists. He/She will have the opportunity to learn new techniques in computational analysis as well as laboratory environments. We offer an excellent scientific infrastructure, strong integration into bioinformatics workflow and a vibrant community of research labs.

» Your future with us

Working at the University Hospital Cologne and the Medical Faculty means helping to shape the future - the future of medicine, of patients and, of course, your own future. You benefit from 59 clinics and institutes as well as numerous other departments and facilities and more than 10,000 jobs. The Faculty of Medicine of the University of Cologne and the University Hospital Cologne assume important social tasks in research, teaching and patient care. A close network with many university and non-university partners guarantees an internationally successful science and the excellent education of our students.

» Your future in detail

The position is a joint venture between the Dieterich Lab, the Müller Lab within the Department II of Internal Medicine at the University Hospital Cologne, and the Antczak Lab at the Center for Molecular Medicine Cologne. The successful candidate will be primarily based in Cologne and regularly visits the Dieterich Lab in Heidelberg during the time of the project.

Our team is part of the Center of Excellence for cellular stress responses in aging-associated diseases (CECAD) of the University of Cologne. CECAD provides an extremely dynamic environment for research into the aging process and related diseases. You will join this research environment to make an important contribution to finding novel therapeutic strategies for so far unmet clinical needs.

Further information is available on the internet at Nephrolab.

Applications from female candidates are expressly welcome and will be given priority in the event of equal suitability, competence and professional performance.

People with disabilities are welcome to apply and will be treated preferentially in the event of equal suitability and qualification.

The position is suitable for staffing with part-time employees.

Contact:

Prof. Dr. Roman-Ulrich Müller
+49 221 478-30966
https://www.uk-koeln.de
Application deadline: 12.06.2022

Universitätsklinikum Köln AöR
PA30
Geschäftsbereich Personal
Job-ID: 00003103
50937 Köln

Biomedical Data Scientist / Software developer Visualization (m/f/d)

The successful applicant will be part of a collaborative research environment within the HiGHMed consortium (http://www.highmed.org ) and the Network University Medicine (NUM). He/she will be employed at the Klaus Tschira Institute for Integrative Computational Cardiology (www.dieterichlab.org). The position is located at Heidelberg University Hospital. In-person or hybrid work models are possible.

  • Job-ID:V000009480
  • Field of application:Klinik für Kardiologie, Angiologie und Pneumologie
  • Location:Heidelberg
  • Start date:as soon as possible
  • Job Category:Wissenschaft und Lehre
  • Working hours:full-/part-time
  • Published:02.05.2022
  • Limitation:Temporary (1 year, option of further extension)
  • Contract:TV-L

Tasks

This position focuses on developing web applications to visualize and analyze biomedical data from clinical studies, clinical routine and consumer health products (i.e. smartwatches). The new team member will explore new and innovative ways to transform raw biomedical data sets into compelling, interactive and meaningful visual representations. This will happen in combination with applying and implementing exploratory data analysis as well as machine learning models.

  • Data cleaning and preprocessing
  • Analyzing data using basic statistics as well as machine learning
  • Time series data analysis
  • Creating web-application for interactive data visualizations

Required Qualifications

  • Proven Python programming skills with frameworks like Flask, Plotly, etc.
  • Documented experience in client-side web programming with JavaScript
  • Excellent knowledge of database systems, preferably PostgreSQL
  • Good Linux administration skills
  • Proficiency in Container technologies (e.g. Docker, Singularity)
  • State-of-the-art software development (Git, Tests, Continuous integration)
  • Optional: Experience with machine learning, specifically on multi-modal data and time series analysis.
  • Optional: Proven experience with Apple iOS application development

What we offer

The Dieterich Lab (www.dieterichlab.org) offers a stimulating, diverse and international research environment. We are embedded in a vibrant community of cardiovascular research laboratories and collaborate with many experimental or theoretical laboratories in the Heidelberg area.

In addition, we offer:

  • Goal-oriented, individual continuing education and training opportunities.
  • Job ticket
  • Possibility of child care (crèche and kindergarten) as well as subsidy for vacation care for school children
  • Active health promotion
  • Company pension plan
  • Access to the university library and other university facilities (e.g. university sports)

Contact & Application

Please upload a cover letter, resume, and source code references as part of your online application.


Klinik für Kardiologie, Angiologie und Pneumologie
Prof. Dr. rer. nat. Christoph Dieterich
Im Neuenheimer Feld 669
69120 Heidelberg
sekretariat.dieterich@med.uni-heidelberg.de

Studienassistenz HiGHmed – Digitale Kardiologie (m/w/d)

zum nächstmöglichen Zeitpunkt an der Klinik für Kardiologie, Angiologie und Pneumologie und der Abteilung Bioinformatik und Systemkardiologie am Klaus Tschira Institute for Computational Cardiology gesucht.

Die Stelle ist vorerst befristet auf 13 Monate mit der Option der Verlängerung. Die Vergütung erfolgt nach TV-UK.
 

Der erfolgreiche Bewerber wird Teil des HiGHmed-Konsortiums (http://www.highmed.org) und unterstützt das Team im Use Case Cardiology sowie bei weiteren Projekten im Rahmen des Zentrums für innovative Versorgung (ZIV). Der HiGHmed Use Case hat sich eine standardisierte Befunderhebung zur systematischen Erfassung von Langzeitdaten (retrospektiv und prospektiv) von Patienten mit chronischer Herzinsuffizienz zum Ziel gesetzt. Hierdurch sollen Risikopatienten identifiziert werden. Die Datenerhebung wird durch den Einsatz von Smart Wearables (Apple Watches) unterstützt werden.

Er/Sie wird in den Arbeitsgruppen Molekulargenetisches Labor für funktionelle Molekulargenetik und translationale Biotechnology) (www.mederlab.com) sowie Bioinformatik und Systemkardiologie (www.dieterichlab.org) angestellt sein.

  • Job-ID:P0035V369
  • Einsatzgebiet:Klinik für Kardiologie, Angiologie und Pneumologie
  • Einsatzort:Heidelberg
  • Tätigkeitsbereich:Medizinisch-Technische Dienste
  • Anstellungsart:Vollzeit (100%)
  • Veröffentlicht:15.03.2022
  • Vertrag:TV-UK

Ihre Aufgaben

  • Studienpatientenrekrutierung und -aufklärung 
  • Erhebung, Dokumentation und Pflege von Studiendaten (u.a. Durchführung von Follow Ups)
  • Ansprechpartner und Betreuung von Studienpatienten
  • Koordinierung und Ausgabe von tragbaren Sensoren (Smart Watches) für die Patienten
  • Enge Zusammenarbeit mit den Studienärzten und -personal

Ihr Profil

  • Abgeschlossenen Berufsausbildung in der Gesundheits- und Krankenpflege, MTA, MFA, Dokumentar oder gleichwertige Qualifikation
  • Erfahrung in Durchführung von klinischen Studien und Kenntnisse in klinischen Abläufen wären wünschenswert, sind aber keine Voraussetzung
  • Spaß und Freude am Umgang mit Menschen
  • Interesse an klinischer Forschung
  • Fließende Deutschkenntnisse in Word und Schrift erforderlich
  • Gute EDV-Kenntnisse der Standardanwendungen Windows und MS Office
  • Technische Affinität wäre wünschenswert, ist aber keine Voraussetzung
  • Teamplayer, kommunikativ und soziale Kompetenzen, verbindlich und gewissenhaft
  • Organisierte und selbstständige Arbeitsweise
  • Bereitschaft zur Weiterbildung und gelegentliche Reisen zu Studientreffen

Wir bieten Ihnen

  • Zielorientierte, individuelle Fort- und Weiterbildungsmöglichkeiten
  • Gezielte Einarbeitung
  • Jobticket
  • Möglichkeit der Kinderbetreuung (Kinderkrippe und Kindergarten) sowie Zuschuss zur Ferienbetreuung für Schulkinder
  • Aktive Gesundheitsförderung
  • Betriebliche Altersvorsorge
  • Zugriff auf die Universitätsbibliothek und andere universitäre Einrichtungen (z. B. Universitätssport)

Kontakt & Bewerbung

Interessiert?

Wir freuen uns auf Ihre Bewerbung, bevorzugt direkt online.


Klinik für Kardiologie, Angiologie und Pneumologie
Prof. Dr. rer. Nat. Christoph Dieterich & Dr. med. A. Amr
Im Neuenheimer Feld 669
69120 Heidelberg
sekretariat.dieterich(at)med.uni-heidelberg.de

Contact & Application
Please upload a covering letter/supporting statement, including a brief statement of research interests, CV and the details of two referees as part of your online application.
Applications should be sent by email in ONE pdf-file to sekretariat.dieterich(at)med.uni-heidelberg.de

Please do not hesitate to contact us if you have any further questions.

University Hospital Heidelberg
Department of Internal Medicine III
Section of Bioinformatics & Systems Cardiology
Prof. Dr. rer. nat. Christoph Dieterich
Im Neuenheimer Feld 669
69120 Heidelberg
sekretariat.dieterich(at)med.uni-heidelberg.de

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